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Intron Name: Anas_platyrhynchos_platyrhynchos_1_80000006_80000138_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

80000006 - 80000138

Intron Length:

133

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

CTACATGGGAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTCTAC

U12 Branch Point Sequence:

TCTCTCCCAATT

Flanking Amino Acid:

KILPGGYAVIGAAALTGAVS

Intron Amino Acid Position:

548

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

79.6

35.4

Major BPS

63.9

0.35

1.3

64.5

42.5

Major PPT

-0.1

1.2

43.5

Minor 5ss

34.9

-1.7

3.1

47.1

42.6

Minor BPS

48.8

-0

1.9

41.2

Associated Gene:

Gene:

CLCN1

Ensembl Gene ID:

ENSAPLG00000004009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046486

79990342 - 80032777

42436

ENSAPLT00000045237

79990342 - 80053707

63366

ENSAPLT00000044841

79990342 - 80053581

63240

ENSAPLT00000004156

79990342 - 80032871

42530