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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80004585_80004998_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80004585 - 80004998
Intron Length:
414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CACAGTTTATCC
Flanking Amino Acid:
PGFGQFMAGELMPREAISSL
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.8
75
35.2
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
77.6
0.62
0.9
73.7
36.9
Minor 5ss
28.6
-2.5
3.4
37.5
47.2
Minor BPS
43.2
-0.5
2
47.34
42.5

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436