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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80005084_80006218_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80005084 - 80006218
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTGCC
5'SS Class:
major
3'SS Sequence:
TCTTTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATATTTTAACA
Flanking Amino Acid:
HTALSQFLTKYRLIYPGVIS
Intron Amino Acid Position:
409

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
64.8
33.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
91.6
0.94
0.6
84.4
30.5
Minor 5ss
30.4
-2.2
3.1
37.6
34.7
Minor BPS
72.5
0.7
1.2
76.84
33.6

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436