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Intron Name: Anas_platyrhynchos_platyrhynchos_1_80013981_80016865_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80013981 - 80016865

Intron Length:

2885

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCAAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CAACTCTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

AACTTTTTAACT

Flanking Amino Acid:

VGCCFGTPLGGVLFSIEVTS

Intron Amino Acid Position:

305

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.16

0.7

88.8

25.1

Major BPS

87.3

0.93

0.8

36.5

Major PPT

70.8

0.47

0.9

62.1

39.3

Minor 5ss

22.7

-3.1

3.9

34.8

41.6

Minor BPS

72.5

0.78

1.1

78.76

37.6

Associated Gene:

Gene:

CLCN1

Ensembl Gene ID:

ENSAPLG00000004009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046486

79990342 - 80032777

42436

ENSAPLT00000045237

79990342 - 80053707

63366

ENSAPLT00000044841

79990342 - 80053581

63240

ENSAPLT00000004156

79990342 - 80032871

42530