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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80016945_80021412_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80016945 - 80021412
Intron Length:
4468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCACCAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAC
U12 Branch Point Sequence:
GTCTCTTCCACC
Flanking Amino Acid:
FMSIFCGVYEQPYYYTDVLT
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
55.1
0.13
1.3
67.8
38.2
Major PPT
65
0.34
0.9
60.4
29.7
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
49.4
-0
2
62.91
42.8

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436
ENSAPLT00000045237
79990342 - 80053707
63366