Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80021491_80021821_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80021491 - 80021821

Intron Length:

331

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAATATT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTTAT

U12 Branch Point Sequence:

CCTCTCTTATTT

Flanking Amino Acid:

LGSGLPVGKEGPFVHIASIC

Intron Amino Acid Position:

253

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

93.3

21.1

Major BPS

79.1

0.72

69.3

38.4

Major PPT

89.3

0.88

0.6

84.5

23.3

Minor 5ss

-1

59.7

44.8

Minor BPS

0.23

1.6

68.23

43.4

Associated Gene:

Gene:

CLCN1

Ensembl Gene ID:

ENSAPLG00000004009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004156

79990342 - 80032871

42530

ENSAPLT00000046486

79990342 - 80032777

42436

ENSAPLT00000045237

79990342 - 80053707

63366

ENSAPLT00000044841

79990342 - 80053581

63240