Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80022187_80023675_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80022187 - 80023675

Intron Length:

1489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGGGTCTC

5'SS Class:

major

3'SS Sequence:

TGTCTATCTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAATGAC

U12 Branch Point Sequence:

GTTTGTCTATCT

Flanking Amino Acid:

MDYASAKSLQAYKWMYKELH

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.9

0.52

1.1

63.1

43.4

Major BPS

0.42

1.1

57.7

Major PPT

80.1

0.68

0.9

73.4

36.2

Minor 5ss

31.5

-2.1

3.2

35.3

41.4

Minor BPS

47.1

-0.1

2.3

73.15

43.8

Associated Gene:

Gene:

CLCN1

Ensembl Gene ID:

ENSAPLG00000004009

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045237

79990342 - 80053707

63366

ENSAPLT00000044841

79990342 - 80053581

63240

ENSAPLT00000004156

79990342 - 80032871

42530

ENSAPLT00000046486

79990342 - 80032777

42436