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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80023808_80024306_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80023808 - 80024306
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAACA
5'SS Class:
major
3'SS Sequence:
CTTCCCTACACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGTTCAC
U12 Branch Point Sequence:
TCTTCCCTACAC
Flanking Amino Acid:
IKEEHYSKCQACARRIEKYI
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70.4
35.4
Major BPS
57.1
0.18
1.3
63.1
44.5
Major PPT
74
0.54
0.8
68.5
30.7
Minor 5ss
26.9
-2.7
2.9
31.8
42.3
Minor BPS
50.8
0
2.1
68.28
43

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045237
79990342 - 80053707
63366
ENSAPLT00000044841
79990342 - 80053581
63240
ENSAPLT00000004156
79990342 - 80032871
42530
ENSAPLT00000046486
79990342 - 80032777
42436