About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80027135_80032664_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80027135 - 80032664
Intron Length:
5530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCTG
5'SS Class:
major
3'SS Sequence:
AAATTCTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTCTTTTAAAA
Flanking Amino Acid:
TTWRTPSATHSFCGAQKPRV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1.1
64.3
47.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.2
0.59
1
66.6
44
Minor 5ss
33
-1.9
3.6
46.2
49.1
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
CLCN1
Ensembl Gene ID:
ENSAPLG00000004009
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046486
79990342 - 80032777
42436