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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80061599_80061691_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80061599 - 80061691
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCCACAGGAACT
Flanking Amino Acid:
DMICGYACLKGTAAMRNTRR
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.1
51.7
45.2
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
88.9
0.87
0.6
88
21.8
Minor 5ss
27.6
-2.6
3.6
38.4
46.6
Minor BPS
43
-0.4
2.3
62.64
46.8

Associated Gene:

Gene:
CASP2
Ensembl Gene ID:
ENSAPLG00000004839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005035
80060387 - 80076681
16295