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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80065624_80066059_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80065624 - 80066059
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATTAC
5'SS Class:
major
3'SS Sequence:
TTGCTTCTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
GAATACTTAGCT
Flanking Amino Acid:
VYGTDGKLLQLQEAFRLFDN
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.4
31.5
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
82.3
0.73
0.8
80.8
31.2
Minor 5ss
45.9
-0.4
2.6
60.6
44.5
Minor BPS
57.3
0.31
1.8
72.7
43.1

Associated Gene:

Gene:
CASP2
Ensembl Gene ID:
ENSAPLG00000004839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005035
80060387 - 80076681
16295