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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80066189_80067104_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80066189 - 80067104
Intron Length:
916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAT
U12 Branch Point Sequence:
GAAGGATTAAGC
Flanking Amino Acid:
VTVFHDQSAEEMQSALERFS
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
66.7
0.41
1.4
69.7
44.2
Major PPT
88.3
0.86
0.7
80.7
31.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
40.5
-0.7
2.2
46.29
42

Associated Gene:

Gene:
CASP2
Ensembl Gene ID:
ENSAPLG00000004839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005035
80060387 - 80076681
16295