About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80068930_80070792_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80068930 - 80070792
Intron Length:
1863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TGTTTTTGCATA
Flanking Amino Acid:
SCNSKKPRWIEPVEHSLDNG
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.2
35.9
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.5
0.57
0.9
72.4
37.8
Minor 5ss
29.2
-2.4
2.8
32.4
36.1
Minor BPS
48.3
-0.1
1.8
63.99
36.9

Associated Gene:

Gene:
CASP2
Ensembl Gene ID:
ENSAPLG00000004839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005035
80060387 - 80076681
16295