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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80070869_80072527_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80070869 - 80072527
Intron Length:
1659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GGATGTCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATGGATT
Flanking Amino Acid:
ESNLSNGIAQVEHFHGSDLP
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
70.6
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
66
0.36
1
58.7
42.8
Minor 5ss
39.7
-1.2
2.8
49
47.2
Minor BPS
62.7
0.48
1.8
85.3
34.6

Associated Gene:

Gene:
CASP2
Ensembl Gene ID:
ENSAPLG00000004839
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005035
80060387 - 80076681
16295