Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80072696_80076531_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80072696 - 80076531

Intron Length:

3836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGCGGC

5'SS Class:

major

3'SS Sequence:

TCTCTGGATCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTGGAT

U12 Branch Point Sequence:

GTTACTTTGAGT

Flanking Amino Acid:

ITAEMMEMIQAKSGSFSQNV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.6

0.65

1.1

64.1

41.8

Major BPS

58.9

0.22

1.5

59.3

47.1

Major PPT

66.2

0.37

58.2

42.3

Minor 5ss

35.3

-1.7

3.6

49.7

46.9

Minor BPS

59.7

0.39

1.7

76.49

40.3

Associated Gene:

Gene:

CASP2

Ensembl Gene ID:

ENSAPLG00000004839

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005035

80060387 - 80076681

16295