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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80080272_80081657_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80080272 - 80081657
Intron Length:
1386

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
ACCAGCGTAACT
Flanking Amino Acid:
EVPPNRQSQAGVNAAYEAPT
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.7
41.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
72
0.5
0.9
68.1
37.6
Minor 5ss
40.2
-1.1
2.8
45.4
42.5
Minor BPS
45
-0.3
2.4
62.4
47.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000702
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000676
80079866 - 80083869
4004