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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80099031_80100835_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80099031 - 80100835
Intron Length:
1805

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGATGT
5'SS Class:
major
3'SS Sequence:
ATTTGTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TAAATTTTAACT
Flanking Amino Acid:
ETTEEAIKYGVKNGWGQFLQ
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
68.5
39.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
83.9
0.76
0.8
77.8
36
Minor 5ss
33.8
-1.8
3.1
39.1
46.1
Minor BPS
69.3
0.68
1.2
78.49
37.4

Associated Gene:

Gene:
GSTK1
Ensembl Gene ID:
ENSAPLG00000005224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018433
80098887 - 80106230
7344