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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80100953_80103165_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80100953 - 80103165
Intron Length:
2213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TGTCTTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ACTTAATTAACT
Flanking Amino Acid:
DISQMESIVAVAGRAGLSSE
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73
36.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
85.3
0.8
0.7
84.1
30.8
Minor 5ss
40.2
-1.1
3.4
62.5
42.2
Minor BPS
64.1
0.52
1.8
80.92
40.2

Associated Gene:

Gene:
GSTK1
Ensembl Gene ID:
ENSAPLG00000005224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005410
80098887 - 80106230
7344
ENSAPLT00000037818
80100311 - 80106230
5920
ENSAPLT00000018433
80098887 - 80106230
7344