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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80103202_80103628_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80103202 - 80103628
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTATT
5'SS Class:
major
3'SS Sequence:
ATTCTTTCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATTCTTTCACC
Flanking Amino Acid:
REFWMRFWSQHEDISQMESI
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.3
81.8
38.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77.5
0.62
0.9
71.2
39
Minor 5ss
35.7
-1.6
3.1
51.1
45.4
Minor BPS
70.2
0.62
1.7
79.29
36

Associated Gene:

Gene:
GSTK1
Ensembl Gene ID:
ENSAPLG00000005224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037818
80100311 - 80106230
5920
ENSAPLT00000018433
80098887 - 80106230
7344
ENSAPLT00000005410
80098887 - 80106230
7344