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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80105004_80105682_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80105004 - 80105682
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTATGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CGACTATTAATC
Flanking Amino Acid:
VSPYSWLGFEVLCRYQHIWN
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.64
0.9
72.2
37.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
48.9
-0.1
1.6
54.33
37.3

Associated Gene:

Gene:
GSTK1
Ensembl Gene ID:
ENSAPLG00000005224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035407
80098887 - 80106230
7344
ENSAPLT00000018433
80098887 - 80106230
7344
ENSAPLT00000005410
80098887 - 80106230
7344
ENSAPLT00000037818
80100311 - 80106230
5920