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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80118507_80118993_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
80118507 - 80118993
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGACTAGC
5'SS Class:
major
3'SS Sequence:
CACAAAATGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TCCCCGCCAACC
Flanking Amino Acid:
VDCSGGRCTSKISAPVIVCV
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.2
66
40.1
Major BPS
74.1
0.6
1
69
38.9
Major PPT
42.2
-0.4
1.7
40.1
42.2
Minor 5ss
37.9
-1.4
2.7
45.5
36.7
Minor BPS
40.8
-0.7
2.4
52.85
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026735
80118347 - 80137650
19304