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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80118541_80118846_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80118541 - 80118846
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TGATTCTCCACC
Flanking Amino Acid:
VPGTTSSTRADLPRQPETQN
Intron Amino Acid Position:
893

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
80.7
0.69
0.9
78.5
35.1
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
49.5
-0
2
64.01
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005735
80118347 - 80137744
19398