About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80119013_80119054_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
80119013 - 80119054
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CAGACTAGGAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
GGTTCATTACAC
Flanking Amino Acid:
HKEDAAVDCSGGRCTSKISA
Intron Amino Acid Position:
662

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
40.8
-0.5
1.7
34.8
39.6
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
49
-0
2
62.89
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026735
80118347 - 80137650
19304