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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80119512_80120423_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80119512 - 80120423
Intron Length:
912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAACTACA
5'SS Class:
major
3'SS Sequence:
TTAATTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAATATTTAATT
Flanking Amino Acid:
RAEETHISCTGRKGTATPAT
Intron Amino Acid Position:
757

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
73.3
37.4
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82.7
0.74
0.9
77.6
36.4
Minor 5ss
41.7
-0.9
2.6
49.4
41.6
Minor BPS
60.9
0.42
1.5
70.78
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005735
80118347 - 80137744
19398