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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80120739_80127222_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80120739 - 80127222
Intron Length:
6484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGTCTTTATTT
Flanking Amino Acid:
HKEDAGVLCSEFLDLRLVNG
Intron Amino Acid Position:
652

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.5
29.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.6
0.64
1
82.9
32.2
Minor 5ss
41.1
-1
2.6
50.2
46.2
Minor BPS
65
0.55
1.5
77.76
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026735
80118347 - 80137650
19304
ENSAPLT00000005735
80118347 - 80137744
19398