Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80128792_80129227_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

80128792 - 80129227

Intron Length:

436

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

CTCTTGAGCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAA

U12 Branch Point Sequence:

TATTATTCAATA

Flanking Amino Acid:

ARETATVVCSGLPDSLRLSD

Intron Amino Acid Position:

441

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.6

1.03

0.8

77.9

38.6

Major BPS

0.82

0.8

83.9

25.3

Major PPT

65.7

0.35

57.6

42.1

Minor 5ss

33.6

-1.9

2.9

40.4

45.7

Minor BPS

57.6

0.24

1.7

69.88

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005553

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026735

80118347 - 80137650

19304

ENSAPLT00000005735

80118347 - 80137744

19398