Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80129388_80131887_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

80129388 - 80131887

Intron Length:

2500

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGGATATC

5'SS Class:

weak_major

3'SS Sequence:

TGGCTATGCAAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTGAA

U12 Branch Point Sequence:

GTCAGCTGAACT

Flanking Amino Acid:

ICNELKCGHASIETGDLFVD

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.6

0.09

1.1

58.9

40.1

Major BPS

58.2

0.2

1.1

49.1

Major PPT

51.9

0.04

1.2

51.8

41.1

Minor 5ss

35.7

-1.6

3.3

43.6

Minor BPS

50.9

0.11

70.55

45.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005553

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026735

80118347 - 80137650

19304