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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80130615_80131730_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80130615 - 80131730
Intron Length:
1116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
AGGTCCTTTATT
Flanking Amino Acid:
CSHDAYVLCSGYGGYRLANG
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
83.7
0.76
0.8
78.1
30
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
64.1
0.52
1.6
74.94
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005553
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005735
80118347 - 80137744
19398