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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80185260_80188246_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80185260 - 80188246
Intron Length:
2987

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTT
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTTCTCACCT
Flanking Amino Acid:
NQTWKNLLNQVVGWNITGIG
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
83.7
27.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
74.2
0.54
0.8
66.1
35.2
Minor 5ss
32.5
-2
3.5
48.7
47.5
Minor BPS
66
0.58
1.8
87.74
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326