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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80188394_80188995_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80188394 - 80188995
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAC
U12 Branch Point Sequence:
TTGTCCTTTACT
Flanking Amino Acid:
PFDPKTNVIQIDHPEFEMPP
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
61.7
0.29
1.1
55
40.4
Major PPT
87.7
0.85
0.7
83.2
25.1
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
79.4
1.01
1.5
92.33
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326