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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80190396_80190804_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80190396 - 80190804
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTATC
5'SS Class:
major
3'SS Sequence:
GTTTTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTGTTTTACTT
Flanking Amino Acid:
FFRTNIKELQEKAPAIDWLS
Intron Amino Acid Position:
297

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.9
36.9
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
79.3
0.66
0.8
71
40
Minor 5ss
56.8
0.23
2.1
71.6
38.3
Minor BPS
59.5
0.38
1.7
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326