About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80192467_80192926_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80192467 - 80192926
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTTCTCTATT
Flanking Amino Acid:
TLHGKMGSKVTPAERWKKCL
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.8
34.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.9
0.81
0.8
80
32
Minor 5ss
34.2
-1.8
2.8
37
41.8
Minor BPS
61
0.43
1.8
83.71
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326