About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80193038_80193994_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80193038 - 80193994
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTCTCCATGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CAGTTCTGAATG
Flanking Amino Acid:
EIFPQQTKKLAEEMFSEIQD
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
76.5
38.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
73.5
0.53
1
70
35.1
Minor 5ss
42.8
-0.8
3.2
65.4
40.1
Minor BPS
52.7
-0
1.5
52.63
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326