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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80194658_80195094_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80194658 - 80195094
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
ACTCTTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATTTCCCAACT
Flanking Amino Acid:
TAKVNLEYQNLEINEDTFFL
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73
34
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.4
0.59
0.8
73.7
30.6
Minor 5ss
42.5
-0.8
3.1
59.9
45
Minor BPS
53.1
0.18
1.9
73.95
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326