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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80195199_80196101_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80195199 - 80196101
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGCTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GTTCTCTCATTT
Flanking Amino Acid:
SKLLQHHSHVNWQVSPWAVH
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.4
0.71
0.8
73.8
36.9
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
49.5
0.04
1.8
70.21
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326