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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80198440_80198681_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80198440 - 80198681
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTACC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAA
U12 Branch Point Sequence:
ATAGCTTTACTT
Flanking Amino Acid:
HELLHAFYGYVLPGGCPTCN
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
67.6
37.6
Major BPS
56.1
0.15
1
52.7
34.2
Major PPT
90.4
0.91
0.6
85.1
22.6
Minor 5ss
30.3
-2.3
2.9
34
35.4
Minor BPS
55
0.24
1.7
70.49
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005596
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005792
80172015 - 80201340
29326