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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80240094_80251917_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80240094 - 80251917
Intron Length:
11824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TACTTGACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAC
U12 Branch Point Sequence:
TTTTACTTGACT
Flanking Amino Acid:
LDEIYLLQQKRICESPLLQA
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
74.2
0.6
1
67
39.4
Major PPT
73.5
0.53
0.9
66.7
39
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
81.8
1.08
1.3
96.72
27.8

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417