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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80252016_80252441_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80252016 - 80252441
Intron Length:
426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TTACTGTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAAAT
U12 Branch Point Sequence:
CTTCCCTTACTG
Flanking Amino Acid:
IDGTCDIYQRGATGETALHV
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
69.8
0.49
1.1
75.5
35.2
Major PPT
77.2
0.61
0.9
69.6
41.4
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
59.7
0.17
1.8
64.41
43.9

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417