About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80253674_80254193_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80253674 - 80254193
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACATCCT
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
AGGGTCTTAATA
Flanking Amino Acid:
RRSSQNLLYFGEHVLSFAAC
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
61.5
42.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
88.7
0.87
0.7
83.8
24.3
Minor 5ss
35.3
-1.7
3.3
48.1
42.7
Minor BPS
59.8
0.3
1.4
61.62
39.1

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006477
80239316 - 80269732
30417
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417