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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80254682_80261033_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80254682 - 80261033
Intron Length:
6352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTATCTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTCTTTGTATCT
Flanking Amino Acid:
KLAGVEGNTVARQILDLTPV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.6
34.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
76
0.59
0.9
73.6
36.7
Minor 5ss
38.5
-1.3
2.9
46.1
43.6
Minor BPS
49.1
0.01
2.2
74.38
43.4

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030041
80239316 - 80269732
30417