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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80261632_80262814_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80261632 - 80262814
Intron Length:
1183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAT
U12 Branch Point Sequence:
AAGTCCTAAAGT
Flanking Amino Acid:
IGAVVILILEIPDILRVGAA
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
69.5
0.44
0.9
67
38.8
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
55
0.24
2
71.31
45.4

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417