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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80263371_80263636_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80263371 - 80263636
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAGAA
5'SS Class:
major
3'SS Sequence:
CTTTGCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTTAT
U12 Branch Point Sequence:
CTTTGCTCTACA
Flanking Amino Acid:
LGPFTIMIQKMIFGDLMRFC
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
66.4
32.6
Major BPS
61.1
0.28
1.3
53.6
43.8
Major PPT
83
0.74
0.8
76.4
32.3
Minor 5ss
35.2
-1.7
3.4
46.4
48.9
Minor BPS
48.4
-0.1
2.3
67.53
44.7

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417
ENSAPLT00000040082
80239316 - 80269732
30417