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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80263704_80264318_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80263704 - 80264318
Intron Length:
615

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
TGGTCTACTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTT
Flanking Amino Acid:
MAVVILGFASAFYIIFQTEN
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.3
0.46
0.9
67.6
38.9
Minor 5ss
32.4
-2
3
40.7
45.5
Minor BPS
54.1
0.21
1.7
72.08
39.1

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006477
80239316 - 80269732
30417
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417