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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80265752_80267282_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80265752 - 80267282
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATCCTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTACTTAATT
Flanking Amino Acid:
EYGLGDRWYLRVEDRVDPNK
Intron Amino Acid Position:
634

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.6
0.64
0.8
72.5
31.8
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
77.3
0.93
1.4
88.96
35.9

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417