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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80267542_80269524_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80267542 - 80269524
Intron Length:
1983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATATGAT
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
GTTGCTCTAATT
Flanking Amino Acid:
GEVNHAMEEE*
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
76.4
32.3
Major BPS
79.2
0.72
1
75
40
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
39.8
-1.1
3.3
57.3
47.4
Minor BPS
58.5
0.35
1.8
77.07
39.9

Associated Gene:

Gene:
TRPV6
Ensembl Gene ID:
ENSAPLG00000006224
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027307
80239316 - 80269732
30417
ENSAPLT00000006477
80239316 - 80269732
30417
ENSAPLT00000040082
80239316 - 80269732
30417
ENSAPLT00000030041
80239316 - 80269732
30417