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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80331919_80332493_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80331919 - 80332493
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TATTCTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CCTGTTTTAACA
Flanking Amino Acid:
TFDVISRMTLEDIQHIGITL
Intron Amino Acid Position:
965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
80.8
33.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
86.8
0.83
0.7
81.4
30.1
Minor 5ss
40.6
-1.1
2.8
47.9
41.8
Minor BPS
62.5
0.39
1.4
65.59
41.9

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934