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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80332650_80333814_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
80332650 - 80333814
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
GTTTTTAGAATC
Flanking Amino Acid:
ALKATGTGSSRPSQPLLSNS
Intron Amino Acid Position:
913

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
70
0.5
1
67
39.8
Major PPT
81.5
0.71
0.8
75.7
32.7
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
49.7
-0
1.7
64.42
35

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934