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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80340378_80341305_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
80340378 - 80341305
Intron Length:
928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAACAA
5'SS Class:
major
3'SS Sequence:
TCTTCACTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TACCTCTTCACT
Flanking Amino Acid:
DNGSLDSFLRQKEGQFSVLQ
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.4
0.27
1.1
52.3
40.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
84.7
0.78
0.7
81.7
29.1
Minor 5ss
29.1
-2.4
3.3
29.6
43.1
Minor BPS
58.2
0.34
1.8
74.02
42.7

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934