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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80341554_80341962_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80341554 - 80341962
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGA
5'SS Class:
major
3'SS Sequence:
CCCCCCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GTCTCCTTACTT
Flanking Amino Acid:
FIKIEEVIGSGEFGEVCFGR
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.4
42
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
65.2
0.34
0.9
59.8
29.8
Minor 5ss
34.8
-1.7
3.5
47.2
48.2
Minor BPS
68.4
0.66
1.6
80.32
42.1

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934