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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_80342083_80342195_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
80342083 - 80342195
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
GTCTCCTCTACT
Flanking Amino Acid:
DRLQQYISTRGLGVKYYIDP
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.4
1.14
0.6
94.3
17.7
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
79.2
0.66
0.8
73.6
29.8
Minor 5ss
38.6
-1.3
3.4
57.8
46.8
Minor BPS
59.4
0.38
1.9
77.54
44.4

Associated Gene:

Gene:
EPHB6
Ensembl Gene ID:
ENSAPLG00000006930
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007264
80328671 - 80387604
58934